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Tuesday, December 30, 2008

Running Dynamics

We have started a new dynamics simulation on another machine because our Itanium2 cluster has been core dumping NAMD. Why, I do not know? The error message is "regcache incompatible with malloc", though I am not sure why we got this message. Also, I have had this message on runs that worked. This new machine is a SGI Altix and we will see if job 3732 runs to completion.

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Monday, December 15, 2008

Isotope Filter Pulse Programs

Well I have finished the paper before Thanksgiving so now am expanding the documentation for my thesis. Hoping to get some good graphic program to make diagrams for a presentation I will give. In the past, I have used postscript edited by hand. The spectra for the paper and thesis look great this way! Anyway, I will evaluate any postscript editors I can get my hands on over the Christmas break. (If you have suggestions please comment or email!!)

Thanks

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